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Causal inference for Medical Analysis

Clinical Impact of a Universal Remote Monitoring Platform for ICD and CRT-D Follow-up from a Large Real-World Registry.Varma N, Marijon E, Abraham A, Ibnouhsein I, Bonnet JL, Rosier A, Singh J — HRS 2023 Late Breaking Clinical Trials


An in silico drug repurposing pipeline to identify drugs with the potential to inhibit SARS-CoV-2 replicationMacMahon M, Hwang W, Yim S, MacMahon E, Abraham A, Barton J, Tharmakulasingam M, Bilokon P, Gaddi VP, Han, N. — Informatics in Medicine Unlocked

Active Learning and Model Uncertainty Estimation

OpenAL: Evaluation and Interpretation of Active Learning Strategies.Jonas W, Abraham A, Dreyfus-Schmidt L — NeurIPS 2022 Workshop on Human in the Loop Learning

Towards Clear Expectations for Uncertainty Estimation.Bouvier V, Maggio S, Abraham A, Dreyfus-Schmidt L — ICLR 2022 Workshop on ML Evaluation Standards

Cardinal, a metric-based Active learning framework.Abraham A, Dreyfus-Schmidt L — Software Impacts

Sample Noise Impact on Active Learning.Abraham A, Dreyfus-Schmidt L — IAL Workshop at ECML PKDD 2021

Rebuilding Trust in Active Learning with Actionable Metrics.Abraham A, Dreyfus-Schmidt L — ICDMW 2020

Functional Neuroimaging

Deriving reproducible biomarkers from multi-site resting-state data: An Autism-based example.Abraham A, Milham MP, Di Martino A, Craddock RC, Samaras D, Thirion B, Varoquaux G. — NeuroImage 2017

Learning functional brain atlases modeling inter-subject variabilityAbraham A. — PhD thesis 2015

Machine learning for neuroimaging with scikit-learn.Abraham A, Pedregosa F, Eickenberg M, Gervais P, Mueller A, Kossaifi J, Gramfort A, Thirion B, Varoquaux G. — Frontiers in neuroinformatics 2014

Region segmentation for sparse decompositions: better brain parcellations from rest fMRI.Abraham A, Dohmatob E, Thirion B, Samaras D, Varoquaux G. — International Workshop on Sparsity Techniques in Medical Imaging 2014

Extracting brain regions from rest fMRI with total-variation constrained dictionary learning.Abraham A, Dohmatob E, Thirion B, Samaras D, Varoquaux G. — International Conference on Medical Image Computing and Computer-Assisted Intervention 2013

Benchmarking functional connectome-based predictive models for resting-state fMRI.Dadi K, Rahim M, Abraham A, Chyzhyk D, Milham M, Thirion B, Varoquaux G, Alzheimer’s Disease Neuroimaging Initiative. — NeuroImage 2019

Predicting brain-age from multimodal imaging data captures cognitive impairment.Liem F, Varoquaux G, Kynast J, Beyer F, Masouleh SK, Huntenburg JM, Lampe L, Rahim M, Abraham A, Craddock RC, Riedel-Heller S. — Neuroimage 2017

Loading and plotting of cortical surface representations in Nilearn.Huntenburg J, Abraham A, Loula J, Liem F, Dadi K, Varoquaux G. — Research Ideas and Outcomes 2017

Comparing functional connectivity based predictive models across datasets.Dadi K, Abraham A, Rahim M, Thirion B, Varoquaux G. — International Workshop on Pattern Recognition in Neuroimaging 2016

Integrating multimodal priors in predictive models for the functional characterization of alzheimer’s disease.Rahim M, Thirion B, Abraham A, Eickenberg M, Dohmatob E, Comtat C, Varoquaux G. — International Conference on Medical Image Computing and Computer-Assisted Intervention 2015

Recommender Systems

Offline A/B testing for recommender systems.Gilotte A, Calauzènes C, Nedelec T, Abraham A, Dollé S. — Proceedings of the Eleventh ACM International Conference on Web Search and Data Mining 2018

Morphological Image Processing

Morphology on color images.Abraham A. — Master’s thesis

Topological Watershed.Abraham A. — Master’s thesis